1992 Honda Prelude Modifications?

I have a 4th gen Honda Prelude Si. I'm currently working on getting a 2JZ-GTE for it (it has a stock H23A1 in it right now, the only problem with it is a massive rod knock.) In addition to the 2JZ, I want to do a complete overhaul under the hood. As of now, it has had nothing done to it in terms of performance upgrading, like I said, it's completely stock. But I need suggestions as to what kind of modifications I should make to improve performance. The 2JZ should bring it up to around 400 horsepower, and I plan on purchasing a Typhoon Cold Air Intake when I find one. I'm not very well versed in cars, I just recently got into cars and engines, etc. It would be greatly appreciated if anyone who answers could throw up some suggestions to what I should buy, where I could possibly find said parts, and a price range for each. Thanks to everyone who answers, it is much appreciated!

Added (1). Plus I need to know what kind of transmission I will need when I make the conversion, I know the stock transmission isn't going to fit the 2JZ.

Nice