Car subwoofer/amp problems?

I have an RE 2000.1 amp and a Polk audio dxi 112 subwoofer in my 1991 Honda civic lx. When I first got the subwoofer(about 6 months ago) , the bass seemed much stronger than it is now. When I try to increase the gain or bass boost, the subwoofer it begins to play a slapping kind of noise. Also it plays the bass louder at first and then kind of lowers on sustained notes.

My main question is if the amp, sub, or alternator in my car is going bad and/or how would I check this.

The gain is not a volume knob, that slapping sound you are hearing is the sub bottoming out cause your gain is too high. The reason your sub is not hitting as hard is cause you will get used to the bass, as for the sub hitting harder at first means that you are probably dropping the voltage from the battery to the amp, that could be a number of things could be a poor ground or poor connection somewhere in the power wire.

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